Power Web Service 2.0.0

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B

betaMatrixFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create a fixed/random beta matrix from the study design.
betweenParticipantContrastFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create a fixed/random between participant contrast (C matrix) from the study design.
BOLD_CLOSE - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
BOLD_OPEN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 

C

ContrastHelper - Class in edu.ucdenver.bios.powersvc.resource
Contrast generator class
ContrastHelper() - Constructor for class edu.ucdenver.bios.powersvc.resource.ContrastHelper
 
CovarianceHelper - Class in edu.ucdenver.bios.powersvc.resource
Routines for generating covariance matrices from domain layer covariance objects
CovarianceHelper() - Constructor for class edu.ucdenver.bios.powersvc.resource.CovarianceHelper
 
covarianceToRealMatrix(Covariance, RepeatedMeasuresNode) - Static method in class edu.ucdenver.bios.powersvc.resource.CovarianceHelper
Convert a covariance object into a RealMatrix.
covarianceToRealMatrix(Covariance, List<ResponseNode>) - Static method in class edu.ucdenver.bios.powersvc.resource.CovarianceHelper
Create a covariance matrix for responses
createInboundRoot() - Method in class edu.ucdenver.bios.powersvc.application.PowerApplication
Define URI mappings for incoming power, sample size, and detectable difference requests.

D

DEFAULT_SIMULATION_SIZE - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
Default simulation size.
DefaultResource - Class in edu.ucdenver.bios.powersvc.resource
Default request resource.
DefaultResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.DefaultResource
 
designMatrixFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Return the design matrix if present, or generate a cell means coded design essence matrix for "guided" study designs
DetectableDifferenceResource - Interface in edu.ucdenver.bios.powersvc.resource
Main interface for calculating power, sample size, and detectable difference.
DetectableDifferenceServerResource - Class in edu.ucdenver.bios.powersvc.resource
Implementation of the PowerResource interface for calculating power, sample size, and detectable difference.
DetectableDifferenceServerResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.DetectableDifferenceServerResource
 
DISPLAY_MATRIX_BETA - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_BETWEEN_CONTRAST - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_DESIGN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_SIGMA_ERROR - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_SIGMA_GAUSSIAN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_SIGMA_OUTCOME - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_SIGMA_OUTCOME_GAUSSIAN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_THETA_NULL - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
DISPLAY_MATRIX_WITHIN_CONTRAST - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 

E

edu.ucdenver.bios.powersvc.application - package edu.ucdenver.bios.powersvc.application
Application level classes including Restlet entry point, constants, and logging setup.
edu.ucdenver.bios.powersvc.resource - package edu.ucdenver.bios.powersvc.resource
Restlet resources which process incoming requests based on the incoming URI structure.
edu.ucdenver.bios.powersvc.resource.test - package edu.ucdenver.bios.powersvc.resource.test
JUnit Test cases for the Power Web Service.

F

FTestResource - Class in edu.ucdenver.bios.powersvc.resource.test
Resource exposing some unit test functionality.
FTestResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.test.FTestResource
Create a new resource to handle unit test requests.

G

get() - Method in class edu.ucdenver.bios.powersvc.resource.test.FTestResource
Process the unit test request for a given variant.
getDetectableDifference(StudyDesign) - Method in interface edu.ucdenver.bios.powersvc.resource.DetectableDifferenceResource
Calculate the detectable difference for the specified study design.
getDetectableDifference(StudyDesign) - Method in class edu.ucdenver.bios.powersvc.resource.DetectableDifferenceServerResource
Calculate the detectable difference for the specified study design.
getInstance() - Static method in class edu.ucdenver.bios.powersvc.application.PowerLogger
Create a single instance of a logging class.
getMatrices(StudyDesign) - Method in interface edu.ucdenver.bios.powersvc.resource.PowerMatrixResource
Get matrices used in the power calculation for a "guided" study design
getMatrices(StudyDesign) - Method in class edu.ucdenver.bios.powersvc.resource.PowerMatrixServerResource
Get matrices used in the power calculation for a "guided" study design
getMatricesAsHTML(StudyDesign) - Method in interface edu.ucdenver.bios.powersvc.resource.PowerMatrixHTMLResource
Get matrices used in the power calculation for a "guided" study design as an HTML formatted string.
getMatricesAsHTML(Form) - Method in interface edu.ucdenver.bios.powersvc.resource.PowerMatrixHTMLResource
Get matrices used in the power calculation for a "guided" study design as an HTML formatted string.
getMatricesAsHTML(StudyDesign) - Method in class edu.ucdenver.bios.powersvc.resource.PowerMatrixHTMLServerResource
Get matrices used in the power calculation for a "guided" study design as an HTML formatted string.
getMatricesAsHTML(Form) - Method in class edu.ucdenver.bios.powersvc.resource.PowerMatrixHTMLServerResource
Get matrices used in the power calculation for a "guided" study design as an HTML formatted string.
getPower(StudyDesign) - Method in interface edu.ucdenver.bios.powersvc.resource.PowerResource
Calculate power for the specified study design.
getPower(StudyDesign) - Method in class edu.ucdenver.bios.powersvc.resource.PowerServerResource
Calculate power for the specified study design.
getRho(int, int, double, double) - Method in class edu.ucdenver.bios.powersvc.resource.LearCorrelation
Calculate the Lear correlation between the ith and jth repeated measurement.
getSampleSize(StudyDesign) - Method in interface edu.ucdenver.bios.powersvc.resource.SampleSizeResource
Calculate the total sample size for the specified study design.
getSampleSize(StudyDesign) - Method in class edu.ucdenver.bios.powersvc.resource.SampleSizeServerResource
Calculate the total sample size for the specified study design.
grandMean(int, boolean) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Calculate the grand mean contrast
grandMeanBetween(List<BetweenParticipantFactor>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create grand mean contrast for between participant effects
grandMeanWithin(List<RepeatedMeasuresNode>, List<ResponseNode>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create grand mean contrast for within participant effects

I

interactionBetween(List<HypothesisBetweenParticipantMapping>, List<BetweenParticipantFactor>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create an interaction contrast for between participant effects
interactionWithin(List<HypothesisRepeatedMeasuresMapping>, List<RepeatedMeasuresNode>, List<ResponseNode>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create an interaction contrast for within participant effects

L

LearCorrelation - Class in edu.ucdenver.bios.powersvc.resource
Class to compute the Lear correlation for a single dimension of repeated measures
LearCorrelation(List<Integer>) - Constructor for class edu.ucdenver.bios.powersvc.resource.LearCorrelation
Create a Lear Correlation object to calculate correlation between repeated measurements.

M

mainEffectBetween(BetweenParticipantFactor, List<BetweenParticipantFactor>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create a main effect contrast for between participant factors.
mainEffectWithin(RepeatedMeasuresNode, List<RepeatedMeasuresNode>, List<ResponseNode>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create a main effect contrast for within participant factors.
MATRIX_BETA - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_BETA_RANDOM - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_BETWEEN_CONTRAST - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_BETWEEN_CONTRAST_RANDOM - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_DESIGN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_SIGMA_ERROR - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_SIGMA_GAUSSIAN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_SIGMA_OUTCOME - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_SIGMA_OUTCOME_GAUSSIAN - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_THETA_NULL - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MATRIX_WITHIN_CONTRAST - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 
MAX_SIMULATION_SIZE - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
Maximum allowed simulation size.

N

namedMatrixListFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create the list of matrices generated by the specified study design

P

PowerApplication - Class in edu.ucdenver.bios.powersvc.application
Main Restlet application class for the Power Service.
PowerApplication(Context) - Constructor for class edu.ucdenver.bios.powersvc.application.PowerApplication
Class which dispatches http requests to the appropriate handler class for the power service.
PowerConstants - Class in edu.ucdenver.bios.powersvc.application
Convenience class for power service constants.
PowerLogger - Class in edu.ucdenver.bios.powersvc.application
Singleton Log4J wrapper class.
PowerMatrixHTMLResource - Interface in edu.ucdenver.bios.powersvc.resource
Main interface for retrieving an html formatted display of matrices.
PowerMatrixHTMLServerResource - Class in edu.ucdenver.bios.powersvc.resource
Resource which generates an HTML representation of the matrices used in a power calculation
PowerMatrixHTMLServerResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.PowerMatrixHTMLServerResource
 
PowerMatrixResource - Interface in edu.ucdenver.bios.powersvc.resource
Main interface for calculating power, sample size, and detectable difference.
PowerMatrixServerResource - Class in edu.ucdenver.bios.powersvc.resource
Implementation of the PowerResource interface for calculating power, sample size, and detectable difference.
PowerMatrixServerResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.PowerMatrixServerResource
 
PowerResource - Interface in edu.ucdenver.bios.powersvc.resource
Main interface for calculating power, sample size, and detectable difference.
PowerResourceHelper - Class in edu.ucdenver.bios.powersvc.resource
Helper class for conversion to/from domain layer objects
PowerResourceHelper() - Constructor for class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
 
PowerServerResource - Class in edu.ucdenver.bios.powersvc.resource
Implementation of the PowerResource interface for calculating power, sample size, and detectable difference.
PowerServerResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.PowerServerResource
 

R

represent() - Method in class edu.ucdenver.bios.powersvc.resource.DefaultResource
Self-identify the Power Service and version number when a GET request is received.
RESPONSES_COVARIANCE_LABEL - Static variable in class edu.ucdenver.bios.powersvc.application.PowerConstants
 

S

SampleSizeResource - Interface in edu.ucdenver.bios.powersvc.resource
Main interface for calculating sample size.
SampleSizeServerResource - Class in edu.ucdenver.bios.powersvc.resource
Implementation of the SampleSizeResource interface for calculating sample size.
SampleSizeServerResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.SampleSizeServerResource
 
setUp() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResource
Connect to the server
sigmaCovariateMatrixFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create a sigma covariate matrix from the study design.
sigmaOutcomesCovariateMatrixFromStudyDesign(StudyDesign, RealMatrix, RealMatrix) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create a sigma outcomes/covariate matrix from the study design.
sigmaOutcomesMatrixFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create a sigma outcomes matrix from the study design.
studyDesignToPowerParameters(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Convert a study design object into a power parameters object TODO: should be removed once modifications to java stats are complete

T

TestGuidedDesignConversion - Class in edu.ucdenver.bios.powersvc.resource.test
 
TestGuidedDesignConversion() - Constructor for class edu.ucdenver.bios.powersvc.resource.test.TestGuidedDesignConversion
 
testMatrixDesign() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestGuidedDesignConversion
 
TestMatrixHTMLResource - Class in edu.ucdenver.bios.powersvc.resource.test
 
TestMatrixHTMLResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.test.TestMatrixHTMLResource
 
testPower() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResource
Calculate power for a two-sample t test
TestPowerResource - Class in edu.ucdenver.bios.powersvc.resource.test
Test class to connect to a local instance of the power service
TestPowerResource() - Constructor for class edu.ucdenver.bios.powersvc.resource.test.TestPowerResource
 
TestPowerResourceOnServer - Class in edu.ucdenver.bios.powersvc.resource.test
 
TestPowerResourceOnServer() - Constructor for class edu.ucdenver.bios.powersvc.resource.test.TestPowerResourceOnServer
 
testSampleSize() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResource
Calculate samplesize for a one-sample t test
testUnivariateMatrixDifference() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResourceOnServer
Calculate detectable difference for a two-sample t test
testUnivariateMatrixPower() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResourceOnServer
Calculate power for a two-sample t test
testUnivariateMatrixSampleSize() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResourceOnServer
Calculate sample size for a two-sample t test
testUnivariateStudyDesignMatrices() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestPowerResourceOnServer
 
testUnviariateGuidedDesign() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestGuidedDesignConversion
 
testUnviariateGuidedDesign() - Method in class edu.ucdenver.bios.powersvc.resource.test.TestMatrixHTMLResource
 
thetaNullMatrixFromStudyDesign(StudyDesign, FixedRandomMatrix, RealMatrix) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create a null hypothesis matrix from the study design.
toNamedMatrix(RealMatrix, String) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
This method takes a Real Matrix and converts it into a Named Matrix and returns that Named Matrix.
toPowerResult(GLMMPower) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Convert a GLMMPower object to PowerResult objects
toPowerResultList(List<Power>) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Convert a list of GLMMPower objects to a list of PowerResult objects
toRealMatrix(NamedMatrix) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
This method takes Named Matrix and converts it into a RealMatrix and returns a Real Matrix.
trendBetween(HypothesisBetweenParticipantMapping, List<BetweenParticipantFactor>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create a trend test fpr the specified factor of interest
trendWithin(HypothesisRepeatedMeasuresMapping, List<RepeatedMeasuresNode>, List<ResponseNode>) - Static method in class edu.ucdenver.bios.powersvc.resource.ContrastHelper
Create a trend test fpr the specified within participant of interest

W

withinParticipantContrastFromStudyDesign(StudyDesign) - Static method in class edu.ucdenver.bios.powersvc.resource.PowerResourceHelper
Create the within participant contrast (U matrix) from the study design.
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Power Web Service 2.0.0

University of Colorado Denver, Department of Biostatistics and Informatics