Modifier and Type | Class and Description |
---|---|
class |
ClusteringPanel
Panel which allows the user to enter information about clustering
in the study design
|
class |
FixedPredictorsPanel
Fixed predictor entry screen
|
class |
GaussianCovariateCovariancePanel
Screen to input the correlation between the gaussian covariate
and the outcomes.
|
class |
HypothesisPanel
Hypothesis selection panel
|
class |
MeanDifferencesPanel
Entry screen for means by outcome and study subgroup
|
class |
MeanDifferencesScalePanel
Guided mode equivalent of beta scale panel
|
class |
RelativeGroupSizePanel
Entry screen for relative group sizes
|
class |
RepeatedMeasuresPanel
Panel for entering information about repeated measures.
|
class |
ResponseVariablesPanel
Response variables panel
|
class |
VariabilityCovariateOutcomePanel
Guided model panel for entry of correlations between the covariate and the outcome
|
class |
VariabilityCovariatePanel
Guided mode panel for entering the s.d.
|
class |
VariabilityScalePanel
Guided mode equivalent of sigma scale panel
|
class |
WithinParticipantCovariancePanel |
Modifier and Type | Method and Description |
---|---|
void |
GuidedWizardPanel.onPanel(WizardStepPanel panel) |
Modifier and Type | Class and Description |
---|---|
class |
BetaPanel
Matrix Mode panel which allows input of the regression coefficients
matrix, B.
|
class |
BetaScalePanel
Matrix Mode panel which allows entry of beta-scale factors
|
class |
BetweenSubjectContrastPanel
Matrix mode panel which allows input of the between-subject contrast matrix (C)
|
class |
DesignPanel
Matrix mode panel which allows entry of the design essence matrix
|
class |
SigmaCovariateMatrixPanel
Matrix Mode panel for entering the variance of the Gaussian covariate
for GLMM(F,g) designs
|
class |
SigmaErrorMatrixPanel
Matrix mode panel for entering the covariance of random errors
|
class |
SigmaOutcomeCovariateMatrixPanel
Matrix mode panel for entering the covariance between the outcomes
and the Gaussian covariate
|
class |
SigmaOutcomesMatrixPanel
Matrix mode panel for entering covariance of the outcomes
in a GLMM(F,g) design.
|
class |
SigmaScalePanel
Matrix mode panel allowing entry of scale factors for the error covariance
|
class |
ThetaNullPanel
Matrix mode panel for entering the null hypothesis matrix (theta null)
|
class |
WithinSubjectContrastPanel
Matrix mode panel for entering the within-subject contrast matrix, U.
|
Modifier and Type | Method and Description |
---|---|
void |
MatrixWizardPanel.onPanel(WizardStepPanel panel) |
Modifier and Type | Class and Description |
---|---|
class |
BaselineCovariatePanel
Panel for indicating of a baseline covariate should be included.
|
class |
DynamicTabPanelTest |
class |
IntroPanel
Generic panel for subsection introduction screens
|
class |
OptionsConfidenceIntervalsPanel
Matrix Mode panel which allows the user to set options for confidence
intervals on power results
|
class |
OptionsDisplayPanel
Panel which allows user to select display options for their power/sample size
calculations.
|
class |
OptionsPowerMethodsPanel
Panel which allows user to select statistical tests, display options
for their power/sample size calculations.
|
class |
OptionsTestsPanel
Panel for selecting statistical tests
|
class |
PerGroupSampleSizePanel
Entry panel for per group sample sizes
|
class |
PowerPanel
Panel for entering nominal power values when performing
sample size calculations
|
class |
ResultsDisplayPanel
Final results display panel
|
class |
SolvingForPanel
WizardStepPanel which allows the user to select whether they are solving for
power, sample size, or effect size (i.e.
|
class |
TypeIErrorPanel
Panel for entering type I error values
|
Modifier and Type | Method and Description |
---|---|
void |
GlimmpseApplicationPanel.onPanel(WizardStepPanel panel) |
Modifier and Type | Method and Description |
---|---|
WizardStepPanel |
WizardStepPanelGroup.getIntroPanel()
Get the intro panel for the group
|
WizardStepPanel |
WizardStepPanelButton.getPanel()
Get the panel associated with this button
|
WizardStepPanel |
WizardContextChangeEvent.getSource()
Get the panel that initiated the change
|
Modifier and Type | Method and Description |
---|---|
ArrayList<WizardStepPanel> |
WizardStepPanelGroup.getPanelList()
Get the list of panels contained in the group
|
Modifier and Type | Method and Description |
---|---|
void |
WizardStepPanelGroup.addPanel(WizardStepPanel panel)
Add a panel to the panel group
|
void |
WizardActionListener.onPanel(WizardStepPanel panel)
Callback for navigating directly to a specific panel
|
void |
WizardPanel.onPanel(WizardStepPanel panel)
Show the specified panel when the link is clicked in
the left navigation bar
|
void |
WizardLeftNavigationPanel.onStateChange(WizardStepPanel source,
WizardStepPanelState oldState,
WizardStepPanelState newState)
Respond to a state change in a panel
|
void |
WizardPanel.onStateChange(WizardStepPanel source,
WizardStepPanelState oldState,
WizardStepPanelState newState) |
void |
WizardStepPanelStateChangeHandler.onStateChange(WizardStepPanel source,
WizardStepPanelState oldState,
WizardStepPanelState newState) |
void |
WizardPanel.setVisiblePanel(WizardStepPanel panel)
Show the specified panel in the wizard
|
void |
WizardLeftNavigationPanel.showPanel(WizardStepPanel panel)
Display the specific panel and open the group
|
void |
WizardStepDisclosurePanel.showPanel(WizardStepPanel panel)
Highlight the button associated with the specified panel.
|
void |
WizardStepDisclosurePanel.updateState(WizardStepPanel panel,
WizardStepPanelState oldState,
WizardStepPanelState newState)
Respond to a state change in a panel
|
Constructor and Description |
---|
WizardContextChangeEvent(WizardStepPanel source)
Create a context change event from the specified source panel
|
WizardPanel(WizardContext context,
List<WizardStepPanelGroup> wizardPanelGroups,
WizardStepPanel finishPanel)
Create a wizard panel with the specified groups of panels
|
WizardStepPanelButton(String name,
WizardStepPanel panel,
ClickHandler handler)
Creates a button which stored meta information about the current panel
and its position in the FlexTable
|
WizardStepPanelButton(WizardStepPanel panel,
ClickHandler handler)
Creates a button which stored meta information about the current panel
and its position in the FlexTable
|
WizardStepPanelGroup(String name,
WizardStepPanel introPanel)
Create an empty panel group
|
Modifier and Type | Method and Description |
---|---|
void |
StudyDesignContext.addBetaScale(WizardStepPanel panel,
double betaScale)
Add a beta scale value to the study design
|
void |
StudyDesignContext.addBetweenParticipantFactor(WizardStepPanel panel,
String predictorName)
Add a between participant factor to the StudyDesign
|
void |
StudyDesignContext.addBetweenParticipantFactorCategory(WizardStepPanel panel,
String predictorName,
String categoryName)
Add a category to a between participant factor in the StudyDesign
|
void |
StudyDesignContext.addClusteringNode(WizardStepPanel panel,
ClusterNode clusteringNode)
Add a clustering node
|
void |
StudyDesignContext.addConfidenceIntervalOptions(WizardStepPanel panel)
Add an empty power confidence interval description to the context
|
void |
StudyDesignContext.addHypothesisBetweenParticipantFactor(WizardStepPanel panel,
BetweenParticipantFactor factor)
Add a between participant factor to the hypothesis object
|
void |
StudyDesignContext.addHypothesisRepeatedMeasuresFactor(WizardStepPanel panel,
RepeatedMeasuresNode factor)
Add a repeated measures factor to the hypothesis object
|
void |
StudyDesignContext.addNominalPower(WizardStepPanel panel,
double power)
Add a nominal power value to the study design
|
void |
StudyDesignContext.addPerGroupSampleSize(WizardStepPanel panel,
int sampleSize)
Add a per group sample size value to the study design
|
void |
StudyDesignContext.addPowerCurveDataSeries(WizardStepPanel panel,
PowerCurveDataSeries series)
Add a data series to the power curve description
|
void |
StudyDesignContext.addPowerMethod(WizardStepPanel panel,
PowerMethodEnum powerMethod)
Add a power method to the study design
|
void |
StudyDesignContext.addQuantile(WizardStepPanel panel,
double quantile)
Add a quantile value to the study design
|
void |
StudyDesignContext.addRepeatedMeasuresNode(WizardStepPanel panel,
RepeatedMeasuresNode rmNode)
Add a repeated measures node
|
void |
StudyDesignContext.addResponseVariable(WizardStepPanel panel,
String variable)
Add a response variable to the study design
|
void |
StudyDesignContext.addSigmaScale(WizardStepPanel panel,
double sigmaScale)
Add a sigma scale value to the study design
|
void |
StudyDesignContext.addStatisticalTest(WizardStepPanel panel,
StatisticalTestTypeEnum test)
Add the statistical test to the study design
|
void |
StudyDesignContext.addTypeIErrorRate(WizardStepPanel panel,
double alpha)
Add a Type I error rate to the study design
|
void |
StudyDesignContext.clearClustering(WizardStepPanel panel)
Clear all clustering information from the study design
|
void |
StudyDesignContext.clearCovariance(WizardStepPanel panel)
Add covariance information in the study design.
|
void |
StudyDesignContext.clearCovarianceRepeatedMeasures(WizardStepPanel panel)
Clear all repeated measures from the covariance set
|
void |
StudyDesignContext.clearHypothesisFactors(WizardStepPanel panel)
Clear the factors associated with the current hypothesis
|
void |
StudyDesignContext.clearPowerCurveDataSeries(WizardStepPanel panel)
Clear the data series in the power curve description
|
void |
StudyDesignContext.clearRepeatedMeasures(WizardStepPanel panel)
Clear all repeated measures information from the study design
|
void |
StudyDesignContext.deleteBetaScale(WizardStepPanel panel,
double betaScale,
int index)
Delete the specified beta scale value
|
void |
StudyDesignContext.deleteBetweenParticipantFactor(WizardStepPanel panel,
String predictorName)
Delete a between participant factor to the StudyDesign
|
void |
StudyDesignContext.deleteBetweenParticipantFactorCategory(WizardStepPanel panel,
String predictorName,
String categoryName)
Remove a category from a between participant factor in the StudyDesign
|
void |
StudyDesignContext.deleteClusteringNode(WizardStepPanel panel,
int index)
Delete a clustering node
|
void |
StudyDesignContext.deleteConfidenceIntervalOptions(WizardStepPanel panel)
Store the power confidence interval description to the context
|
void |
StudyDesignContext.deleteHypothesisBetweenParticipantFactor(WizardStepPanel panel,
BetweenParticipantFactor factor)
Delete a between participant factor from the hypothesis object
|
void |
StudyDesignContext.deleteHypothesisRepeatedMeasuresFactor(WizardStepPanel panel,
RepeatedMeasuresNode factor)
Delete a repeated measures factor from the hypothesis object
|
void |
StudyDesignContext.deleteNominalPower(WizardStepPanel panel,
double power,
int index)
Delete the specified nominal power value
|
void |
StudyDesignContext.deletePerGroupSampleSize(WizardStepPanel panel,
int sampleSize,
int index)
Delete the specified quantile from the study design
|
void |
StudyDesignContext.deletePowerCurveDataSeries(WizardStepPanel panel,
int index)
Delete the specified data series from the power curve description
|
void |
StudyDesignContext.deletePowerMethod(WizardStepPanel panel,
PowerMethodEnum powerMethod)
Delete the specified power method from the study design
|
void |
StudyDesignContext.deleteQuantile(WizardStepPanel panel,
double quantile,
int index)
Delete the specified quantile from the study design
|
void |
StudyDesignContext.deleteRepeatedMeasuresNode(WizardStepPanel panel,
int index)
Delete a repeated measures node
|
void |
StudyDesignContext.deleteResponseVariable(WizardStepPanel panel,
String variable,
int index)
Delete the specified response variable from the study design
|
void |
StudyDesignContext.deleteSigmaScale(WizardStepPanel panel,
double sigmaScale,
int index)
Delete the specified sigma scale value
|
void |
StudyDesignContext.deleteStatisticalTest(WizardStepPanel panel,
StatisticalTestTypeEnum test)
Remove the statistical test from the study design
|
void |
StudyDesignContext.deleteTypeIErrorRate(WizardStepPanel panel,
double alpha,
int index)
Delete the specified type I error rate
|
void |
StudyDesignContext.setBeta(WizardStepPanel panel,
NamedMatrix fixed,
NamedMatrix random)
Store the beta matrix to the StudyDesign.
|
void |
StudyDesignContext.setBetaValue(WizardStepPanel panel,
int row,
int column,
double value)
Set the value in the beta matrix at the specified row and column
|
void |
StudyDesignContext.setBetweenParticipantContrast(WizardStepPanel panel,
NamedMatrix fixed,
NamedMatrix random)
Store the between participant contrast matrix to the StudyDesign.
|
void |
StudyDesignContext.setCovariance(WizardStepPanel panel,
Covariance covariance)
Add covariance information in the study design.
|
void |
StudyDesignContext.setCovarianceLearParameters(WizardStepPanel panel,
String covarianceName,
double baseCorrelation,
double decayRate)
Update the LEAR parameters (Simpson 2010)
|
void |
StudyDesignContext.setCovarianceStandardDeviationValue(WizardStepPanel panel,
String covarianceName,
int index,
double value)
Set a standard deviation value for the named covariance object
|
void |
StudyDesignContext.setCovarianceType(WizardStepPanel panel,
String covarianceName,
CovarianceTypeEnum type)
Set the type of the named covariance structure
|
void |
StudyDesignContext.setCovarianceValue(WizardStepPanel panel,
String covarianceName,
int row,
int column,
double value)
Set the specified cell value in the named covariance structure
|
void |
StudyDesignContext.setCovariate(WizardStepPanel panel,
boolean hasCovariate)
Store the covariate information in the StudyDesign object.
|
void |
StudyDesignContext.setCovariateOutcomesCovarianceValue(WizardStepPanel panel,
int row,
int column,
double value)
Set the value in the sigmaYG matrix at the specified row and column
|
void |
StudyDesignContext.setDesignEssenceMatrix(WizardStepPanel panel,
NamedMatrix designFixed,
NamedMatrix designRandom)
Store the design essence matrix to the StudyDesign.
|
void |
StudyDesignContext.setGaussianCovariateStandardDeviation(WizardStepPanel panel,
double value)
Set the standard deviation (really the variance) in the sigmaG matrix
|
void |
StudyDesignContext.setHypothesisType(WizardStepPanel panel,
HypothesisTypeEnum type)
Update the type of hypothesis
|
void |
StudyDesignContext.setPowerCurveDescription(WizardStepPanel panel,
boolean includePowerCurve)
Toggle the power curve description in the studyDesign
|
void |
StudyDesignContext.setPowerCurveXAxisType(WizardStepPanel panel,
HorizontalAxisLabelEnum axisType)
Set the X-axis type in the power curve description
|
void |
StudyDesignContext.setRelativeGroupSizeValue(WizardStepPanel panel,
int value,
int index)
Store the relative group size information to the StudyDesign.
|
void |
StudyDesignContext.setSigmaCovariate(WizardStepPanel panel,
NamedMatrix sigmaCovariate)
Store the covariance matrix for the Gaussian covariate to the StudyDesign.
|
void |
StudyDesignContext.setSigmaError(WizardStepPanel panel,
NamedMatrix sigmaError)
Store the covariance matrix for errors to the StudyDesign.
|
void |
StudyDesignContext.setSigmaOutcomes(WizardStepPanel panel,
NamedMatrix sigmaY)
Store the covariance matrix of outcomes to the StudyDesign (for GLMM(F,g) designs).
|
void |
StudyDesignContext.setSigmaOutcomesCovariate(WizardStepPanel panel,
NamedMatrix sigmaYG)
Store the covariance matrix of the Gaussian covariate and outcomes to the StudyDesign.
|
void |
StudyDesignContext.setSolutionType(WizardStepPanel panel,
SolutionTypeEnum solutionType)
Update the StudyDesign with the solution type (i.e.
|
void |
StudyDesignContext.setThetaNull(WizardStepPanel panel,
NamedMatrix thetaNull)
Store the null hypothesis matrix to the StudyDesign.
|
void |
StudyDesignContext.setWithinParticipantContrast(WizardStepPanel panel,
NamedMatrix withinParticipantContrast)
Store the within participant contrast matrix to the StudyDesign.
|
void |
StudyDesignContext.updateClusteringNode(WizardStepPanel panel,
int index,
String clusterName,
int clusterSize,
double icc)
Update the value of a clustering node
|
void |
StudyDesignContext.updateConfidenceIntervalOptions(WizardStepPanel panel,
boolean betaFixed,
boolean sigmaFixed,
double lowerTailProbability,
double upperTailProbability,
int sampleSize,
int rankOfDesignMatrix)
Store the power confidence interval description to the context
|
void |
StudyDesignContext.updateHypothesisBetweenParticipantFactorTrend(WizardStepPanel panel,
BetweenParticipantFactor factor,
HypothesisTrendTypeEnum trendType)
Update the trend information for a between participant factor in the hypothesis object
|
void |
StudyDesignContext.updateHypothesisRepeatedMeasuresFactorTrend(WizardStepPanel panel,
RepeatedMeasuresNode factor,
HypothesisTrendTypeEnum trendType)
Update the trend information for a repeated measures factor in the hypothesis object
|
void |
StudyDesignContext.updateHypothesisThetaNullValue(WizardStepPanel panel,
int row,
int column,
double value)
Update the value in the theta null matrix
|
void |
StudyDesignContext.updateRepeatedMeasuresNode(WizardStepPanel panel,
int index,
String dimension,
RepeatedMeasuresDimensionType rmDimensionType,
int numberOfMeasurements,
List<Spacing> spacingList)
Update the value of a repeated measures node
|
Constructor and Description |
---|
StudyDesignChangeEvent(WizardStepPanel panel,
StudyDesignChangeEvent.StudyDesignChangeType type) |
University of Colorado Denver, Department of Biostatistics and Informatics